/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
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* and open the template in the editor.
*/
package org.broad.igv.ui.action;
import org.broad.igv.track.AttributeManager;
import org.broad.igv.ui.AttributeSelectionDialog;
import org.broad.igv.ui.IGV;
import org.broad.igv.ui.UIConstants;
import org.broad.igv.ui.util.UIUtilities;
import javax.swing.*;
import java.awt.event.ActionEvent;
import java.util.ArrayList;
import java.util.List;
/**
* @author jrobinso
*/
public class GroupTracksMenuAction extends MenuAction {
//static Logger log = Logger.getLogger(GroupTracksMenuAction.class);
IGV mainFrame;
public GroupTracksMenuAction(String label, int mnemonic, IGV mainFrame) {
super(label, null, mnemonic);
this.mainFrame = mainFrame;
}
@Override
public void actionPerformed(ActionEvent e) {
doGroupBy();
}
final public void doGroupBy() {
UIUtilities.invokeOnEventThread(new Runnable() {
public void run() {
final AttributeSelectionDialog dlg = new AttributeSelectionDialog(mainFrame.getMainFrame(), true);
List<String> attributeKeys = AttributeManager.getInstance().getVisibleAttributes();
// Sorting disabled -- order will match the order in the panel. If sorting is desired make a copy
// of the array so the panel is not affected.
//if (attributeKeys != null) {
// Collections.sort(attributeKeys,
// AttributeManager.getInstance().getAttributeComparator());
//}
ArrayList<String> selections = new ArrayList(attributeKeys);
selections.add(0, "None");
String[] selArray = selections.toArray(new String[]{});
dlg.setModel(new javax.swing.DefaultComboBoxModel(selArray));
dlg.setDefaultCloseOperation(JDialog.DISPOSE_ON_CLOSE);
String currentSelection = IGV.getInstance().getGroupByAttribute();
if (currentSelection == null) {
dlg.setSelectedIndex(0);
} else {
dlg.setSelectedItem(currentSelection);
}
dlg.setVisible(true);
if (!dlg.isCanceled()) {
int selIndex = dlg.getSelectedIndex();
String selectedAttribute = (selIndex == 0 ? null : selArray[selIndex]);
IGV.getInstance().setGroupByAttribute(selectedAttribute);
mainFrame.doRefresh();
}
}
});
}
}